<?xml version="1.0" encoding="UTF-8"?>
<compound>
  <version>2.0</version>
  <creation_date>2012-05-31 13:49:01 -0600</creation_date>
  <update_date>2015-09-13 15:15:22 -0600</update_date>
  <accession>ECMDB01276</accession>
  <m2m_id>M2MDB000322</m2m_id>
  <name>N1-Acetylspermidine</name>
  <description>N1-acetylspermidine is a member of the chemical class known as Secondary Carboxylic Acid Amides. These are compounds containing a secondary carboxylic acid amide functional group, with the general structure RC(=O)N(R')H (R,R'=alkyl, aryl). Acetylspermidine is an osmoprotectant. Heat shock, cold shock, ethanol, and alkaline shift stimulate the accumulation of Acetylspermidine in Escherichia coli. This compound is generated by Spermidine acetyltransferase (SAT) which is a tetramer of 4 identical subunits that catlyzes the reaction of acetyl-CoA with spermidine.</description>
  <synonyms>
    <synonym>1-N-Acetylspermidine</synonym>
    <synonym>An &lt;i&gt;N&lt;/i&gt;-acetylspermidine</synonym>
    <synonym>An N-acetylspermidine</synonym>
    <synonym>N(1)-Acetylspermidine</synonym>
    <synonym>N-(3-((4-Aminobutyl)amino)propyl)-Acetamide</synonym>
    <synonym>N-(3-((4-Aminobutyl)amino)propyl)acetamide</synonym>
    <synonym>N-Acetylspermidine</synonym>
    <synonym>N1-Acetylspermidine</synonym>
    <synonym>N1AcSpermidine</synonym>
  </synonyms>
  <chemical_formula>C9H21N3O</chemical_formula>
  <average_molecular_weight>187.2825</average_molecular_weight>
  <monisotopic_moleculate_weight>187.168462309</monisotopic_moleculate_weight>
  <iupac_name>N-{3-[(4-aminobutyl)amino]propyl}acetamide</iupac_name>
  <traditional_iupac>N1-acetylspermidine</traditional_iupac>
  <cas_registry_number>14278-49-0</cas_registry_number>
  <smiles>CC(=O)NCCCNCCCCN</smiles>
  <inchi>InChI=1S/C9H21N3O/c1-9(13)12-8-4-7-11-6-3-2-5-10/h11H,2-8,10H2,1H3,(H,12,13)</inchi>
  <inchikey>MQTAVJHICJWXBR-UHFFFAOYSA-N</inchikey>
  <state>Solid</state>
  <cellular_locations>
    <cellular_location>Cytosol</cellular_location>
  </cellular_locations>
  <predicted_properties>
    <property>
      <kind>logp</kind>
      <value>-0.47</value>
      <source>ALOGPS</source>
    </property>
    <property>
      <kind>logs</kind>
      <value>-1.60</value>
      <source>ALOGPS</source>
    </property>
    <property>
      <kind>solubility</kind>
      <value>4.72e+00 g/l</value>
      <source>ALOGPS</source>
    </property>
  </predicted_properties>
  <experimental_properties>
  </experimental_properties>
  <property>
    <kind>logp</kind>
    <value>-1.3</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>pka_strongest_acidic</kind>
    <value>16.53</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>pka_strongest_basic</kind>
    <value>10.67</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>iupac</kind>
    <value>N-{3-[(4-aminobutyl)amino]propyl}acetamide</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>average_mass</kind>
    <value>187.2825</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>mono_mass</kind>
    <value>187.168462309</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>smiles</kind>
    <value>CC(=O)NCCCNCCCCN</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>formula</kind>
    <value>C9H21N3O</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>inchi</kind>
    <value>InChI=1S/C9H21N3O/c1-9(13)12-8-4-7-11-6-3-2-5-10/h11H,2-8,10H2,1H3,(H,12,13)</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>inchikey</kind>
    <value>MQTAVJHICJWXBR-UHFFFAOYSA-N</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>polar_surface_area</kind>
    <value>67.15</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>refractivity</kind>
    <value>54.41</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>polarizability</kind>
    <value>23.11</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>rotatable_bond_count</kind>
    <value>8</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>acceptor_count</kind>
    <value>3</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>donor_count</kind>
    <value>3</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>physiological_charge</kind>
    <value>2</value>
    <source>ChemAxon</source>
  </property>
  <property>
    <kind>formal_charge</kind>
    <value>0</value>
    <source>ChemAxon</source>
  </property>
  <pathways>
  </pathways>
  <spectra>
    <spectrum>
      <type>Specdb::CMs</type>
      <spectrum_id>2484</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::CMs</type>
      <spectrum_id>164497</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>87712</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>87713</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>87714</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>87715</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>87716</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>87717</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>87718</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>87719</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>87720</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>87721</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>87722</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>87723</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>87724</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>87725</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>87726</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>87727</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>87728</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>87729</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>87730</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::NmrOneD</type>
      <spectrum_id>87731</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>27296</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>27297</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>27298</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>33854</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>33855</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>33856</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>2726195</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>2726196</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>2726197</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>2978780</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>2978781</spectrum_id>
    </spectrum>
    <spectrum>
      <type>Specdb::MsMs</type>
      <spectrum_id>2978782</spectrum_id>
    </spectrum>
  </spectra>
  <hmdb_id>HMDB01276</hmdb_id>
  <pubchem_compound_id/>
  <chemspider_id>482</chemspider_id>
  <kegg_id>C00612</kegg_id>
  <chebi_id>17927</chebi_id>
  <biocyc_id>CPD-568</biocyc_id>
  <het_id/>
  <wikipidia/>
  <foodb_id/>
  <general_references>
    <reference>
      <reference_text>Keseler, I. M., Collado-Vides, J., Santos-Zavaleta, A., Peralta-Gil, M., Gama-Castro, S., Muniz-Rascado, L., Bonavides-Martinez, C., Paley, S., Krummenacker, M., Altman, T., Kaipa, P., Spaulding, A., Pacheco, J., Latendresse, M., Fulcher, C., Sarker, M., Shearer, A. G., Mackie, A., Paulsen, I., Gunsalus, R. P., Karp, P. D. (2011). "EcoCyc: a comprehensive database of Escherichia coli biology." Nucleic Acids Res 39:D583-D590.</reference_text>
      <pubmed_id>21097882</pubmed_id>
    </reference>
    <reference>
      <reference_text>Kanehisa, M., Goto, S., Sato, Y., Furumichi, M., Tanabe, M. (2012). "KEGG for integration and interpretation of large-scale molecular data sets." Nucleic Acids Res 40:D109-D114.</reference_text>
      <pubmed_id>22080510</pubmed_id>
    </reference>
    <reference>
      <reference_text>van der Werf, M. J., Overkamp, K. M., Muilwijk, B., Coulier, L., Hankemeier, T. (2007). "Microbial metabolomics: toward a platform with full metabolome coverage." Anal Biochem 370:17-25.</reference_text>
      <pubmed_id>17765195</pubmed_id>
    </reference>
    <reference>
      <reference_text>Hamana, K. (1996). "Distribution of diaminopropane and acetylspermidine in Enterobacteriaceae." Can J Microbiol 42:107-114.</reference_text>
      <pubmed_id>8742354</pubmed_id>
    </reference>
    <reference>
      <reference_text>Hrushesky WJ, Merdink J, Abdel-Monem MM: Circadian rhythmicity of polyamine urinary excretion.  Cancer Res. 1983 Aug;43(8):3944-7.</reference_text>
      <pubmed_id>6861156</pubmed_id>
    </reference>
    <reference>
      <reference_text>Seiler N, Graham A, Bartholeyns J: Enhanced urinary excretion of N1-acetylspermidine and the presence of tumors. Cancer Res. 1981 Apr;41(4):1572-3.</reference_text>
      <pubmed_id>6897929</pubmed_id>
    </reference>
    <reference>
      <reference_text>Abdel-Monem MM, Merdink JL, Theologides A: Urinary excretion of monoacetyl polyamines in patients with non-Hodgkin's lymphoma. Cancer Res. 1982 May;42(5):2097-8.</reference_text>
      <pubmed_id>7066912</pubmed_id>
    </reference>
    <reference>
      <reference_text>Smith RG, Bartos D, Bartos F, Grettie DP, Frick W, Campbell RA, Daves GD Jr: 1-N-Acetylspermidine: occurrence in normal human serum.  Biomed Mass Spectrom. 1978 Sep;5(9):515-7.</reference_text>
      <pubmed_id>708851</pubmed_id>
    </reference>
    <reference>
      <reference_text>Ruggeri P, Lagana G, Bellocco E, Fabiano C, Leonaldi R, Forino D: Polyamines biosynthesis and oxidation in free-living amoebae. Amino Acids. 2004 Dec;27(3-4):367-72. Epub 2004 Oct 15.</reference_text>
      <pubmed_id>15490259</pubmed_id>
    </reference>
  </general_references>
  <synthesis_reference>Lurdes M; Almeida S; Grehn L; Ragnarsson U  Facile synthesis of monoacetylated spermidines, illustrating selective deacetylation and application of a common precursor.    Acta chemica Scandinavica (Copenhagen, Denmark : 1989)  (1989),  43(10),  990-4. </synthesis_reference>
  <msds_url/>
  <enzymes>
    <enzyme>
      <name>Spermidine N(1)-acetyltransferase</name>
      <uniprot_id>P0A951</uniprot_id>
      <uniprot_name>ATDA_ECOLI</uniprot_name>
      <gene_name>speG</gene_name>
      <protein_url>http://ecmdb.ca/proteins/P0A951.xml</protein_url>
    </enzyme>
  </enzymes>
  <transporters>
  </transporters>
  <reactions>
    <reaction_text>Acetyl-CoA + Spermidine &gt; N1-Acetylspermidine + Coenzyme A + Hydrogen ion</reaction_text>
    <kegg_reaction_id/>
    <ecocyc_id>SPERMACTRAN-RXN</ecocyc_id>
    <pw_reaction_id/>
    <reaction_text>Acetyl-CoA + Spermidine &lt;&gt; N1-Acetylspermidine + Hydrogen ion + Coenzyme A</reaction_text>
    <kegg_reaction_id/>
    <ecocyc_id>SPERMACTRAN-RXN</ecocyc_id>
    <pw_reaction_id/>
  </reactions>
  <concentrations>
    <growth_media>199 Medium with Earle’s salts –which contains 21 amino acids, 17 vitamins, 10 components of nucleic acids, sodium acetate, glucose, NaC1, KCl, CaC12, MgS04, Na2HP04, and Fe(N03)3</growth_media>
    <growth_system>Shake flask</growth_system>
    <concentration>430.0</concentration>
    <concentration_units>uM</concentration_units>
    <internal/>
    <error>0.0</error>
    <temperature>37 oC</temperature>
    <strain>K12 HB101</strain>
    <growth_status>Mid Log Phase</growth_status>
    <molecules>1720000</molecules>
    <molecules_error>0</molecules_error>
    <reference>
      <reference_text>Hamana, K. (1996). "Distribution of diaminopropane and acetylspermidine in Enterobacteriaceae." Can J Microbiol 42:107-114.</reference_text>
      <pubmed_id>8742354</pubmed_id>
    </reference>
    <growth_media>199 Medium with Earle’s salts –which contains 21 amino acids, 17 vitamins, 10 components of nucleic acids, sodium acetate, glucose, NaC1, KCl, CaC12, MgS04, Na2HP04, and Fe(N03)3</growth_media>
    <growth_system>Shake flask</growth_system>
    <concentration>30.0</concentration>
    <concentration_units>uM</concentration_units>
    <internal/>
    <error>0.0</error>
    <temperature>37 oC</temperature>
    <strain>K12 HB101</strain>
    <growth_status>Stationary Phase</growth_status>
    <molecules>120000</molecules>
    <molecules_error>0</molecules_error>
    <reference>
      <reference_text>Hamana, K. (1996). "Distribution of diaminopropane and acetylspermidine in Enterobacteriaceae." Can J Microbiol 42:107-114.</reference_text>
      <pubmed_id>8742354</pubmed_id>
    </reference>
  </concentrations>
</compound>
