Identification
Name:Probable diguanylate cyclase YedQ
Synonyms:
  • DGC
  • Cellulose synthesis regulatory protein
Gene Name:yedQ
Enzyme Class:
Biological Properties
General Function:Signal transduction mechanisms
Specific Function:Involved in the regulation of cellulose production. Cyclic-di-GMP is a second messenger which controls cell surface- associated traits in bacteria
Cellular Location:Cell inner membrane; Multi-pass membrane protein (Potential)
SMPDB Pathways:Not Available
KEGG Pathways:Not Available
Metabolites:
ECMDB IDNameView
ECMDB23177Cyclic di-3',5'-guanylateMetaboCard
ECMDB01273Guanosine triphosphateMetaboCard
ECMDB04142PyrophosphateMetaboCard
GO Classification:Not Available
Gene Properties
Blattner:Not Available
Gene OrientationNot Available
Centisome Percentage:Not Available
Left Sequence EndNot Available
Right Sequence EndNot Available
Gene Sequence:
>1695 bp
GTGCAGCACGAGACAAAAATGGAAAACCAGAGCTGGTTGAAAAAACTCGCACGCCGCCTG
GGGCCTGGTCATGTCGTTAATCTCTGCTTTATCGTGGTATTGCTTTTTTCCACCTTGCTC
ACCTGGCGTGAAGTGGTGGTGCTGGAAGATGCCTATATCTCCAGCCAGCGTAATCATCTG
GAAAACGTTGCCAACGCGCTCGATAAGCATTTGCAGTATAACGTCGACAAACTGATCTTT
TTACGTAATGGCATGCGCGAAGCTCTCGTAGCGCCACTGGATTTCACCTCTCTGCGTGAT
GCTGTAACCGAGTTCGAACAGCATCGCGACGAGCACGCCTGGAAAATCGAACTCAACCGA
CGACGCACTCTGCCAGTTAATGGTGTGTCGGATGCATTAGTCAGCGAGGGGAATCTCCTG
TCTCGCGAAAATGAAAGCCTCGACAATGAAATTACCGCTGCACTGGAAGTTGGTTACTTG
CTGCGACTAGCGCACAACTCCTCGTCGATGGTTGAACAGGCGATGTATGTCTCGCGTGCC
GGATTTTACGTTTCGACGCAGCCGACCTTGTTTACGCGCAATGTTCCAACGCGTTATTAC
GGCTATGTCACCCAACCCTGGTTTATTGGCCATTCACAACGAGAAAATCGTCACCGCGCG
GTACGCTGGTTCACTTCGCAACCGGAACACGCCAGCAATACTGAACCGCAGGTTACCGTC
AGTGTTCCGGTAGACAGTAATAACTACTGGTATGGCGTGCTGGGGATGAGTATTCCCGTG
CGTACTATGCAGCAATTTTTAAGAAACGCCATCGATAAAAACCTCGATGGTGAGTATCAG
CTCTATGACAGTAAGCTGAGATTTTTGACCTCTTCCAATCCTGACCATCCAACAGGGAAT
ATTTTTGATCCTCGTGAACTGGCCTTGCTGGCGCAGGCAATGGAACATGACACGCGGGGC
GGCATTCGTATGGACAGTCGCTATGTTAGCTGGGAACGTCTGGACCATTTCGACGGTGTG
CTGGTGCGTGTCCATACGTTAAGCGAAGGCGTGCGCGGCGATTTCGGCAGTATCAGCATT
GCATTAACCCTGCTGTGGGCGCTCTTTACCACCATGTTACTCATCTCCTGGTATGTGATT
CGCCGGATGGTTAGCAACATGTATGTTCTGCAAAGCTCGTTGCAGTGGCAGGCGTGGCAC
GACACCTTAACGCGTTTATATAACCGTGGCGCACTGTTCGAAAAAGCCCGTCCGCTCGCT
AAATTGTGTCAGACGCACCAACATCCTTTTTCTGTCATTCAGGTCGATCTTGACCATTTT
AAAGCGATTAATGACCGCTTTGGTCATCAGGCGGGCGACCGTGTTCTTTCTCATGCTGCC
GGATTAATTAGCAGTTCCTTGCGTGCGCAGGACGTTGCCGGGCGGGTCGGTGGTGAGGAG
TTTTGTGTGATTCTGCCAGGCGCGAGTCTGACGGAGGCTGCGGAGGTCGCAGAACGTATT
CGACTGAAATTAAATGAAAAAGAGATGTTGATCGCCAAGAGTACGACGATACGCATCAGT
GCCTCGCTGGGGGTAAGCAGCAGCGAGGAAACCGGTGATTATGATTTTGAACAACTCCAG
TCACTGGCCGACCGTCGGCTTTATCTCGCTAAACAGGCTGGGCGTAATCGGGTATTCGCG
AGCGATAACGCTTAA
Protein Properties
Pfam Domain Function:
Protein Residues:564
Protein Molecular Weight:64282
Protein Theoretical pI:7
Signaling Regions:
  • None
Transmembrane Regions:
  • 20-40
  • 360-380
Protein Sequence:
>Probable diguanylate cyclase YedQ
MQHETKMENQSWLKKLARRLGPGHVVNLCFIVVLLFSTLLTWREVVVLEDAYISSQRNHL
ENVANALDKHLQYNVDKLIFLRNGMREALVAPLDFTSLRDAVTEFEQHRDEHAWKIELNR
RRTLPVNGVSDALVSEGNLLSRENESLDNEITAALEVGYLLRLAHNSSSMVEQAMYVSRA
GFYVSTQPTLFTRNVPTRYYGYVTQPWFIGHSQRENRHRAVRWFTSQPEHASNTEPQVTV
SVPVDSNNYWYGVLGMSIPVRTMQQFLRNAIDKNLDGEYQLYDSKLRFLTSSNPDHPTGN
IFDPRELALLAQAMEHDTRGGIRMDSRYVSWERLDHFDGVLVRVHTLSEGVRGDFGSISI
ALTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQWQAWHDTLTRLYNRGALFEKARPLA
KLCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEE
FCVILPGASLTEAAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQ
SLADRRLYLAKQAGRNRVFASDNA
References
External Links:
ResourceLink
Uniprot ID:P76330
Uniprot Name:YEDQ_ECOLI
GenBank Gene ID:U00096
Genebank Protein ID:87082007
CCDB:YEDQ_ECOLI
General Reference:
  • Blattner, F. R., Plunkett, G. 3rd, Bloch, C. A., Perna, N. T., Burland, V., Riley, M., Collado-Vides, J., Glasner, J. D., Rode, C. K., Mayhew, G. F., Gregor, J., Davis, N. W., Kirkpatrick, H. A., Goeden, M. A., Rose, D. J., Mau, B., Shao, Y. (1997). "The complete genome sequence of Escherichia coli K-12." Science 277:1453-1462. Pubmed: 9278503
  • Boehm, A., Kaiser, M., Li, H., Spangler, C., Kasper, C. A., Ackermann, M., Kaever, V., Sourjik, V., Roth, V., Jenal, U. (2010). "Second messenger-mediated adjustment of bacterial swimming velocity." Cell 141:107-116. Pubmed: 20303158
  • Da Re, S., Ghigo, J. M. (2006). "A CsgD-independent pathway for cellulose production and biofilm formation in Escherichia coli." J Bacteriol 188:3073-3087. Pubmed: 16585767
  • Hayashi, K., Morooka, N., Yamamoto, Y., Fujita, K., Isono, K., Choi, S., Ohtsubo, E., Baba, T., Wanner, B. L., Mori, H., Horiuchi, T. (2006). "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110." Mol Syst Biol 2:2006.0007. Pubmed: 16738553
  • Itoh, T., Aiba, H., Baba, T., Hayashi, K., Inada, T., Isono, K., Kasai, H., Kimura, S., Kitakawa, M., Kitagawa, M., Makino, K., Miki, T., Mizobuchi, K., Mori, H., Mori, T., Motomura, K., Nakade, S., Nakamura, Y., Nashimoto, H., Nishio, Y., Oshima, T., Saito, N., Sampei, G., Seki, Y., Horiuchi, T., et, a. l. .. (1996). "A 460-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 40.1-50.0 min region on the linkage map." DNA Res 3:379-392. Pubmed: 9097040
  • Sommerfeldt, N., Possling, A., Becker, G., Pesavento, C., Tschowri, N., Hengge, R. (2009). "Gene expression patterns and differential input into curli fimbriae regulation of all GGDEF/EAL domain proteins in Escherichia coli." Microbiology 155:1318-1331. Pubmed: 19332833
  • Weber, H., Pesavento, C., Possling, A., Tischendorf, G., Hengge, R. (2006). "Cyclic-di-GMP-mediated signalling within the sigma network of Escherichia coli." Mol Microbiol 62:1014-1034. Pubmed: 17010156